Whole-genome sequencing of pathogens from a hospital setting - SRA

SRX26706776: Whole-genome sequencing of pathogens from a hospital setting
1 ILLUMINA (Illumina MiSeq) run: 792,929 spots, 444.6M bases, 278.6Mb downloads

Design: Illumina library prep using Nextera DNA UD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

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The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN44699185 • SRS23197928 • All experiments • All runs

Organism: Enterococcus faecium

Library:

Name: BWH_406_E_faem

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 792,929 spots, 444.6M bases, 278.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR31329292	792,929	444.6M	278.6Mb	2024-11-13

ID:: 36083178

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Sequence Read Archive

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